📄 Notable^* Recent AI/ML arXiv Papers

Biological function emerges from coupled constraints across sequence, structure, regulation, evolution, and cellular context, yet most foundation models in biology are trained within one modality or for a fixed forward task. We present MIMIC, a generative multimodal foundation model trained on our newly curated and aligned dataset, LORE, linking nucleic acid, protein, evolutionary, structural, regulatory, and semantic/contextual modalities within partially observed biomolecular states. MIMIC use...

Long-context ability, has become one of the most important iteration direction of next-generation Large Language Models, particularly in semantic understanding/reasoning, code agentic intelligence and recommendation system. However, the standard softmax attention exhibits quadratic time complexity with respect to sequence length. As the sequence length increases, this incurs substantial overhead in long-context settings, leading the training and inference costs of extremely long sequences deteri...

Speech-only spoken language models (SLMs) lag behind text and text-speech models in performance, with recent discrete autoregressive (AR) SLMs indicating significant computational and data demands to match text models. Since discretizing continuous speech for AR creates bottlenecks, we explore whether continuous diffusion (CD) SLM is more viable. To quantify the SLMs linguistic quality, we introduce the phoneme Jensen-Shannon divergence (pJSD) metric. Our analysis reveals CD SLMs, mirroring AR b...

LLM-guided evolutionary search has emerged as a promising paradigm for automated algorithm discovery, yet most systems track search progress primarily through executable programs and scalar fitness. Even when natural-language reflection is used, it is often used locally in mutation prompts or stored without an explicit population-level organization of strategic directions. As a result, evolutionary search can struggle to distinguish syntactically different implementations of the same idea, prese...

Automatic speech recognition systems often produce confident yet incorrect transcriptions under noisy or ambiguous conditions, which can be misleading for both users and downstream applications. Standard evaluation based on Word Error Rate focuses solely on accuracy and fails to capture transcription reliability. We introduce an abstention-aware transcription framework that enables ASR models to explicitly abstain from uncertain segments. To evaluate reliability under abstention, we propose RAS,...

Process Reward Models (PRMs) have achieved remarkable success in augmenting the reasoning capabilities of Large Language Models (LLMs) within static domains such as mathematics. However, their potential in dynamic data analysis tasks remains underexplored. In this work, we first present a empirical study revealing that general-domain PRMs struggle to supervise data analysis agents. Specifically, they fail to detect silent errors, logical flaws that yield incorrect results without triggering inte...

Diagnostic prediction and clinical reasoning are critical tasks in healthcare applications. While Large Language Models (LLMs) have shown strong capabilities in commonsense reasoning, they still struggle with diagnostic reasoning due to limited domain knowledge. Existing approaches often rely on internal model knowledge or static knowledge bases, resulting in knowledge insufficiency and limited adaptability, which hinder their capacity to perform diagnostic reasoning. Moreover, these methods foc...

Large language models have demonstrated strong reasoning capabilities in general knowledge question answering. However, their ability to handle temporal information remains limited. To address this limitation, existing approaches often involve external tools or manual verification and are tailored to specific scenarios, leading to poor generalizability. Moreover, these methods apply a fixed pipeline to all questions, overlooking the fact that different types of temporal questions require distinc...

We present a data-driven approach for physics-based, muscle-driven dexterous control that enables musculoskeletal hands to perform precise piano playing for novel pieces of music outside the reference dataset. Our approach combines high-frequency muscle-level control with low-frequency latent-space coordination in a hierarchical architecture. At the low level, general single-hand policies are trained via reinforcement learning to generate dynamic muscle-tendon activations while tracking trajecto...

Accurate monitoring of oil palm plantations is critical for balancing economic development with environmental conservation in Southeast Asia. However, existing plantation maps often suffer from low spatial resolution and a lack of recent temporal coverage, impeding effective surveillance of rapid land-use changes. In this study, we propose a deep learning framework to generate 10-meter resolution oil palm plantation maps for Indonesia and Malaysia from 2020 to 2024, utilizing Sentinel-2 imagery ...

Crop disease diagnosis from field photographs faces two recurring problems: models that score well on benchmarks frequently hallucinate species names, and when predictions are correct, the reasoning behind them is typically inaccessible to the practitioner. This paper describes Agri-CPJ (Caption-Prompt-Judge), a training-free few-shot framework in which a large vision-language model first generates a structured morphological caption, iteratively refined through multi-dimensional quality gating, ...

Recent advancements in large language models (LLMs) have catalyzed the rise of reasoning-intensive inference paradigms, where models perform explicit step-by-step reasoning before generating final answers. While such approaches improve answer quality and interpretability, they incur substantial computational overhead due to the prolonged generation sequences. In this paper, we propose Tandem, a novel collaborative framework that synergizes large and small language models (LLMs and SLMs) to achie...

Physics-aware symbolic simulation of 3D scenes is critical for robotics, embodied AI, and scientific computing, requiring models to understand natural language descriptions of physical phenomena and translate them into executable simulation environments. While large language models (LLMs) excel at general code generation, they struggle with the semantic gap between physical descriptions and simulation implementation. We introduce PhysCodeBench, the first comprehensive benchmark for evaluating ph...

Building scalable and reusable multi-agent decision policies from offline datasets remains a challenge in offline multi-agent reinforcement learning (MARL), as existing methods often rely on fixed observation formats and action spaces that limit generalization. In contrast, large language models (LLMs) offer a flexible modeling interface that can naturally accommodate heterogeneous observations and actions. Motivated by this, we propose the Decision Language Model (DLM), which formulates multi-a...

Scientific publication compresses a branching, iterative research process into a linear narrative, discarding the majority of what was discovered along the way. This compilation imposes two structural costs: a Storytelling Tax, where failed experiments, rejected hypotheses, and the branching exploration process are discarded to fit a linear narrative; and an Engineering Tax, where the gap between reviewer-sufficient prose and agent-sufficient specification leaves critical implementation details ...

Federated learning (FL) offers a promising distributed learning paradigm for internet of vehicles (IoV) applications. However, it faces challenges from communication overhead and dynamic environments. Model compression techniques reduce computing and communication burden yet create trade-offs between compression ratios and vehicle participation strategies. In this paper, we propose a lightweight FL algorithm named federated learning with dynamic low-rank adaptation (Fed-DLoRA), which is combined...

Large language models (LLMs) achieve strong reasoning performance by allocating substantial computation at inference time, often generating long and verbose reasoning traces. While recent work on efficient reasoning reduces this overhead through length-based rewards or pruning, many approaches are post-trained under a much shorter context window than base-model training, a factor whose effect has not been systematically isolated. We first show that short-context post-training alone, using standa...

A central problem in unsupervised domain adaptation is determining what to transfer from labeled source domains to an unlabeled target domain. To handle high-dimensional observations (e.g., images), a line of approaches use deep learning to learn latent representations of the observations, which facilitate knowledge transfer in the latent space. However, existing approaches often rely on restrictive assumptions to establish identifiability of the joint distribution in the target domain, such as ...

The discovery of novel materials is critical for global energy and quantum technology transitions. While deep learning has fundamentally reshaped this landscape, existing predictive or generative models typically operate in isolation, lacking the autonomous orchestration required to execute the full discovery process. Here we present ElementsClaw, an agentic framework for materials discovery that synergizes Large Atomic Models (LAMs) with Large Language Models (LLMs). In response to varied human...

Aligning denoising generative models with human preferences or verifiable rewards remains a key challenge. While policy-gradient online reinforcement learning (RL) offers a principled post-training framework, its direct application is hindered by the intractable likelihoods of these models. Prior work therefore either optimizes an induced Markov decision process (MDP) over sampling trajectories, which is stable but inefficient, or uses likelihood surrogates based on the diffusion evidence lower ...